• Publications: 2001--present
  
  
  • Dan Yao, Hainan Wu, Yuhua Chen,Wenguo Yang, Hua Gao, ChunfaTong*. 2018. gmRAD: an integrated SNP calling pipeline for genetic mapping with RADseq across a hybrid population. Briefings in Bioinformatics, doi: 10.1093/bib/bby114
    
    
  • Shentong Tao, Jiyan Wu, Dan Yao, Yuhua Chen, Wenguo Yang, ChunfaTong*. 2018. Identification of recombination events in outbred species with next-generation sequencing data. BMC Genomics, 19:398
    
    
  • 刘粉香, 陶申童, 吴吉妍, 姚 丹, 童春发* . 2018. 林木多元性状数据QTL区间作图统计分析及其在杨树上的应用. 南京林业大学学报, 42(3): 67-72
    
    
  • Fenxiang Liu, ChunfaTong*, Shentong Tao, Jiyan Wu, Yuhua Chen, Dan Yao, Huogen Li, Jisen Shi. 2017. MVQTLCIM: composite interval mapping of multivariate traits in a hybrid F1 population of outbred species. BMC Bioinformatics, 18:515
    
    
  • Mohaddeseh Mousavi, ChunfaTong*, Fenxiang Liu, Shentong Tao, Jiyan Wu, Huogen Li, Jisen Shi. 2016. De novo SNP discovery and genetic linkage mapping in poplar using restriction site associated DNA and whole-genome sequencing technologies. BMC Genomics,17:656
    
    
  • ChunfaTong*, Huogen Li, Ying Wang, Xuran Li, Jiajia Ou, Deyuan Wang, Houxi Xu, Chao Ma, Xianye Lang, Guangxin Liu, Bo Zhang, Jisen Shi. 2016. Construction of High-Density Linkage Maps of Populus deltoides x P. simonii Using Restriction-Site Associated DNA Sequencing . PLOS ONE, doi: 10.1371/journal.pone.0150692
    
    
  • Fang Xu#, ChunfaTong#, Yafei Lyu, Wenhao Bo, Xiaoming Pang, Rongling Wu. 2015. Allotetraploid and autotetraploid models of linkage analysis. Briefings in Bioinformatics,16:32-38
    
    
  • 王德源, 童春发*. 2015. 林木多地点半同胞子代测定遗传分析R语言程序包及其应用. 南京林业大学学报, 39(5):45-51
    
    
  • Fang Xu#, Yafei Lyu#, ChunfaTong#, Wenhao Bo, Xuli Zhu, Danni Yin, Qin Yan, Jian Zhang, Xiaoming Pan, Christian M. Tobias, Rongling Wu. 2014. A statistical model for QTL mapping in polysomic autotetraploids underlying double reduction. Briefings in Bioinformatics,15:1044-1056
    
    
  • 童春发 , 施季森. 2014. 林木遗传模型统计分析及R语言实现. 科学出版社
    
    
  • ChunfaTong, Lianying Shen, Yafei Lv, ZhongWang, XiaolingWang, Sisi Feng, Xin Li, Yihan Sui, Xiaoming Pang and RonglingWu. 2014. Structural mapping: how to study the genetic architecture of a phenotypic trait through its formation mechanism. Briefings in Bioinformatics, 15:43-53
    
    
  • 童春发，蒋安纳，杨立伟，施季森. 2014. WinNC2: 因子交配设计遗传分析软件. 林业科学，50 (1): 55-62.
    
    
  • Zhongwen Huang, ChunfaTong, Wenhao Bo, Xiaoming Pang, ZhongWang, Jichen Xu, Junyi Gai and RonglingWu. 2014. An allometric model for mapping seed development in plants. Briefings in Bioinformatics, 15:562-570
    
    
  • Chen Xu, Jing Dong, ChunfaTong, Xindong Gong, Qiang Wen and Qiang Zhuge. 2013. Analysis of synonymous codon usage patterns in seven different citrus species. Evolutionary Bioinformatics, 9:215–228
    
    
  • 童春发，杨立伟，蒋安纳，施季森. 2013. 不平衡巢式设计遗传模型分析. 林业科学，49(1): 1-8.
    
    
  • Yafei Lu, Xiaoxia Yang, ChunfaTong, Xin Li, Sisi Feng, ZhongWang, Xiaoming Pang, YaqunWang,NingtaoWang, Christian M. Tobias and RonglingWu. 2013. Amultivalent three-point linkage analysis model of autotetraploids. Briefings in Bioinformatics, 14:460-468
    
    
  • Xiaoxia Yang, Yafei Lv, Xiaoming Pang, Chunfa Tong , ZhongWang, Xin Li, Sisi Feng, Christian M. Tobias and RonglingWu. 2013. Aunifying framework for bivalent multilocus linkage analysis of allotetraploids. Briefings in Bioinformatics, 14:96-108
    
    
  • Chunfa Tong , Guangxin Liu, Liwei Yang, and Jisen Shi. 2012. GSCA: new software and algorithms to analyse diallel mating designs based on restricted linear model. Silvae Genetica, 61(3):
    
    
  • Chunfa Tong , Bo Zhang, Huogen Li, and Jisen Shi. 2012. Model selection for quantitative trait loci mapping in a full-sib family. Genetics and Molecular Biology, 35(3):
    
    
  • Xiyang Zhao#, Chunfa Tong# , Xiaoming Pang#, Zhong Wang, Yunqian Guo, Fang Du and Rongling Wu. 2012. Functional mapping of ontogeny in flowering plants. Briefings in Bioinformatics,13(3):317-328
    
    
  • Kiranmoy Das, Zhongwen Huang, Jingyuan Liu, Guifang Fu,Jiahan Li, Yao Li, Chunfa Tong , Junyi Gai and Rongling Wu. 2012. Functional mapping of developmental processes: theory, applications, and prospects. Methods in Molecular Biology, 871: 227-243
    
    
  • Chunfa Tong , Bo Zhang, Zhong Wang, Meng Xu, Xiaoming Pang, Jingna Si, Minren Huang and Rongling Wu. 2011. Multiallelic epistatic model for an outbred cross and mapping algorithm of interactive quantitative trait loci. BMC Plant Biology, 11: 148
    
    
  • Chunfa Tong , Zhong Wang, Bo Zhang, Jishen Shi and Rongling Wu. 2011. 3FunMap: Full-sib family functional mapping of dynamic traits. Bioinformatics, 27(14): 2006-2008
    
    
  • Wu Rongling, Chunfa Tong , Zhong Wang. 2011. A conceptual framework for pharmacodynamic genome-wide association studies in pharmacogenomics. Drug Discovery Today, 16(19-20): 884-890
    
    
  • Kiranmoy Das, Jiahan Li, Zhong Wang, Chunfa Tong , Guifang Fu, Yao Li, Meng Xu, Kwangmi Ahn, David Mauger, Runze Li, Rongling Wu.2011. A dynamic model for genome-wide association studies. Human Genetics, 129(6): 629-639
    
    
  • Arthur Berg, Ning Li, Chunfa Tong , Zhong Wang, Scott Berceli, Rongling Wu. 2011. Functional mapping of expression quantitative trait loci that regulate oscillatory gene expression. Methods in Molecular Biology,734: 241-245
    
    
  • Chunfa Tong , Bo Zhang and Jisen Shi. 2010. A hidden Markov model approach to multilocus linkage analysis in a full-sib family. Tree Genetics and Genomes, 6:651-662
    
    
  • Jiahan Li, Kiranmoy Das, Guifang Fu, Chunfa Tong , Yao Li, Christian Tobias, Rongling Wu. 2010. Em algorithm for mapping quantitative trait Loci in multivalent tetraploids. International Journal of Plant Genomics, 2010: 216547
    
    
  • 童春发 ，卫巍，尹辉，施季森. 2010. 林木半同胞子代测定遗传模型分析. 林业科学, 46(1):29-35
    
    
  • Bo Zhang, Chunfa Tong , Tongming Yin, Xinye Zhang, Qiang Zhuge, Minren Huang, Mingxiu Wang and Rongling Wu. 2009. Detection of quantitative trait loci influencing growth trajectories of adventitious roots in Populus using functional mapping. Tree Genetics and Genomes, 5:539-552
    
    
  • 单文娟, 童春发 , 施季森. 2008. 基因芯片筛选差异表达基因方法比较. 遗传, 30(12):1640-1646
    
    
  • 单文娟, 周猛, 卫巍, 童春发 , 施季森. 2008. 杨树部分基因起始密码子AUG侧翼序列特征分析. 南京林业大学学报, 32(5):61-64
    
    
  • 周猛, 童春发 , 施季森. 2008. 充分利用Bioperl加速生物信息学的研究. 生物信息学, 6(1):43-45
    
    
  • 周猛, 洑香香, 童春发 , 施季森, 杨立伟, 王桂凤. 2008. 杉木CCoAOMT蛋白的生物信息学分析与同源模建. 生物信息学, 6(2):62-74
    
    
  • Meng Zhou , Chunfa Tong , Jisen Shi. 2007. Analysis of codon usage between different poplar species. Journal of Genetics and Genomics,34(6):555-561
    
    
  • Meng Zhou , Chunfa Tong , Jisen Shi. 2007. A Preliminary Analysis of Synonymous Codon Usage in Poplar Species. Journal of Plant Physiology and Molecular Biology, 33(4):285-293
    
    
  • 周猛, 童春发 , 施季森. 2007. 基于Linux平台的林木EST序列分析系统的构建及应用. 生物信息学, 5(2):74-77
    
    
  • 周猛, 童春发 , 施季森. 2007. 基于Perl语言的序列同源分析过程自动化的实现. 生物技术, 17(1):60-63
    
    
  • 施季森, 童春发 . 2006. 林木遗传图谱构建和QTL定位统计分析. 科学出版社
    
    
  • 童春发 , 施季森. 2005. 林木全同胞群体的多位点连锁分析. 生物数学学报, 20(4):114-122
    
    
  • 童春发 , 施季森. 2004. 利用杉木的F1代群体构建遗传连锁图谱. 遗传学报, 31(10):1149-1156
    
    
  • 施季森, 童春发 . 2004. 利用改进的复合区间作图法和F1代群体进行杉木的QTL作图. 分子植物育种, 2(1):1-6
    
    
  • 童春发 , 施季森. 2002. 标记基因型中QTL基因型条件概率分布. 生物数学学报, 17(4):461-470
    
    
  • 童春发 , 施季森. 2001. 回归法QTL作图效率的分析. 南京林业大学学报, 25(4):12-16